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Thesis
Orek, H.  2000.  An application of mass balance Ecopath model to the trophic structure in the Black Sea after Anchovy collapse..
Bundy, A.  1998.  Assessment and Management of Multispecies, Multigear Fisheries: A Case Study from San Miguel Bay, the Philippines. Fisheries Centre. :DissertationAbstractsInternationalPartBScienceandEngineering[Diss.Abst.Int.Pt.B-Sci.&Eng.],Nov1998,vol.59,n. Abstract
Falk-Petersen, J.  2004.  Ecosystem effects of red king crab invasion – a modelling approach using Ecopath with Ecosim.
Hagy, J D III.  2002.  Eutrophication, hypoxia and trophic transfer effiency in Chesapeake Bay. Faculty of the Graduate School. :446.
Nuttall, MA.  2011.  Historical recount of the Great South Bay ecosystem, Long Island, New York, and, A quantitative assessment of the ecosystem structure of Great South Bay using Ecopath.
Tudman, P D.  2001.  Modelling the trophic effects of fishing on a mid-shelf coral reef of the central Great Barrier Reef. School of Marine Biology and Aquaculture.
Taylor, MH.  2008.  The Northern Humboldt Current Ecosystem and its resource dynamics: Insights from a trophic modeling and time series analysis. Faculty of Biology & Chemistry. PhD:232. Abstract
Rocha, G.  1998.  Quantitative models of trophic interactions on the continental shelf off Ubatuba using Ecopath. Institute of Oceanography.
Coll, M.  2006.  Trophic web modelling and ecological indicators for assessing ecosystem impacts of fishing in the Mediterranean Sea. Animal Biology, Vegetal Biology and Ecology. PhD Thesis
Software
[Anonymous].  1996.  ReefBase: a global database on coral reefs and their resources. Version 1.0. Abstract
[Anonymous].  1997.  ReefBase: a global database on coral reefs and their resources. Version 2.0. Abstract
Report
Kavanagh, P.  2002.  Automated mass balance procedure for Ecopath ecosystem models, User's Guide.
Venier, J.  1996.  Balancing the southern B.C. shelf model. Abstract
Venier, J.  1996.  Balancing the Strait of Georgia model. Abstract
Pauly, D.  1984.  Burma. Methods for assessing the marine stocks of Burma, with emphasis on the demersal species. A report prepared for the Marine Fisheries Resources Survey and Exploratory Fishing Project. Abstract
Morissette, L, Despatie S-P, Savenkoff C, Hammill MO, Bourdages H, Chabot D.  2003.  Data gathering and input parameters to construct ecosystem models for the northern Gulf of St. Lawrence (mid-1980s). :94.
Pauly, D, Trites A, Capuli E, Christensen V.  1995.  Diet composition and trophic levels of marine mammals. Abstract
Bonfil, R, Munro G, Sumaila UR, Valtysson H, Wright M, Pitcher T, Preikshot D, Haggan N, Pauly D.  1998.  Distant water fleets: An ecological, economic and social assessment. Abstract
Christensen, V, Pauly D.  1992.  ECOPATH II - An approach and a software for construction of ecosystem models and food web analysis..
Christensen, V, Pauly D.  1990.  The ECOPATH II model..
Lees, K, Mackinson S.  2007.  An Ecopath model of the Irish Sea: ecosystems properties and sensitivity analysis. CEFAS Science Series Technical Report 138. :40.
Selner, KG, Fisher N, Hager CH, Walter JF, Latour RJ.  2001.  Ecopath with Ecosim workshop, Patuxent wildlife centre, October 22-24, 2001. :23.
Christensen, V, Walters CJ, Pauly D.  2004.  Ecopath with Ecosim: a User's Guide, May 2004 Edition. :158.
Christensen, V, Walters CJ, Pauly D.  2005.  Ecopath with Ecosim: a User's Guide, November 2005 Edition. :158.
Christensen, V, Walters CJ, Pauly D.  2000.  Ecopath with Ecosim: a User's Guide, October 2000 Edition. :130.