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2008
Coll, M, Lotze HK, Romanuk TN.  2008.  Structural degradation in Mediterranean Sea food webs: Testing ecological hypotheses using stochastic and mass-balance modelling. Ecosystems. 11:939-960.
Chen, ZZ, Qiu YS, Jia XP, Xu SN.  2008.  Using an Ecosystem Modeling Approach to Explore Possible Ecosystem Impacts of Fishing in the Beibu Gulf, Northern South China Sea. Ecosystems. 11:1318-1334.
Tam, J, Taylor MH, Blaskovic V, Espinoza P, Ballón M, Díaz E, Wosnitza-Mendo C, Argüelles J, Purca S, Ayón P et al..  2008.  Trophic modeling of the Northern Humboldt Current Ecosystem, Part I: Comparing trophic linkages under La Niña and El Niño conditions. Progress In Oceanography. 79(2-4):352-365. Abstract
Lobry, J, David V, Pasquaud S, Lepage M, Sautour B, Rochard E.  2008.  Diversity and stability of an estuarine trophic network. Marine Ecology-Progress Series. 358:13-25.
Jordán, F, Okey TA, Bauer B, Libralato S.  2008.  Identifying important species: Linking structure and function in ecological networks. Ecological Modelling. 216:75-80. Abstract
2007
Lin, HJ, Shao KT, Jan RQ, Hsieh HL, Chen CP, Hsieh LY, Hsiao YT.  2007.  A trophic model for the Danshuei River Estuary, a hypoxic estuary in northern Taiwan. Marine Pollution Bulletin. 54:1789-1800.
2006
Lin, HJ, Dai XX, Shao KT, Su HM, Lo WT, Hsieh HL, Fang LS, Hung JJ.  2006.  Trophic structure and functioning in a eutrophic and poorly flushed lagoon in southwestern Taiwan. Marine Environmental Research. 62:61-82.
Coll, M, Palomera I, Tudela S, Sardà F.  2006.  Trophic flows, ecosystem structure and fishing impacts in the South Catalan Sea, Northwestern Mediterranean. Journal of Marine Systems. 59:63-96. Abstract
Villanueva, MC, Laleye P, Albaret JJ, Lae R, de Morais LT, Moreau J.  2006.  Comparative analysis of trophic structure and interactions of two tropical lagoons. Ecological Modelling. 197:461-477.