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2009
Cisneros-Montemayor, AM, Christensen V, Sumaila RU, Arreguin-Sanchez F.  2009.  Fisheries in Baja California Sur: A trophic-based analysis of management scenarios. Ecopath 25 Years Conference Proceedings: Extended Abstracts . :29-30.
Mackinson, S, Daskalov G, Heymans JJ, Neira S, Arancibia H, Zetina-Rejón M, Jiang H, Cheng HQ, Coll M, Arreguin-Sanchez F.  2009.  Which forcing factors fit? Using ecosystem models to investigate the relative influence of fishing and changes in primary productivity on the dynamics of marine ecosystems Ecological Modelling. 220:2972-2987.
2007
Cruz-Escalona, VH, Arreguin-Sanchez F, Zetina-Rejon M.  2007.  Analysis of the ecosystem structure of Laguna Alvarado, western Gulf of Mexico, by means of a mass balance model. Estuarine Coastal and Shelf Science. 72:155-167.
2003
Zetina-Rejon, MJ, Arreguin-Sanchez F, Chavez EA.  2003.  Trophic structure and flows of energy in the Huizache-Caimanero lagoon complex on the Pacific coast of Mexico. Estuarine Coastal and Shelf Science. 57:803-815. Abstract
2002
Arreguin-Sanchez, F, Arcos E, Chavez EA.  2002.  Flows of biomass and structure in an exploited benthic ecosystem in the gulf of California, Mexico. Ecological Modelling. 156:167-183. Abstract
2001
Zetina-Rejon, MJ, Arreguin-Sanchez F, Chavez EA.  2001.  Using an ecosystem modeling approach to assess the management of a Mexican coastal lagoon system. California Cooperative Oceanic Fisheries Investigations Reports. 42:88-96. Abstract
Perez-Espana, H, Arreguin-Sanchez F.  2001.  An inverse relationship between stability and maturity in models of aquatic ecosystems. Ecological Modelling. 145:189-196. Abstract
1999
Perez-Espana, H, Arreguin-Sanchez F.  1999.  Complexity related to behavior of stability in modeled coastal zone ecosystems. Aquatic Ecosystem Health & Management. 2:129-135. Abstract
1998
Arreguin-Sanchez, F, Manickchand-Heileman S.  1998.  The trophic role of lutjanid fish and impacts of their fisheries in two ecosystems in the Gulf of Mexico. Journal of Fish Biology. 53:143-153. Abstract
1996
Arreguín-Sánchez, F, Valero E.  1996.  Trophic role of the red grouper (Epinephelus morio) in the ecosystem of the northern continental shelf of Yucatan, Mexico. :19-27. Abstract
1995
Arreguin-Sanchez, F, Chavez EA.  1995.  An investigation of the trophic role of three pelagic fishes in a tropical coastal ecosystem of the western Gulf of Mexico, using the ECOPATH II model. International symposium on middle-sized pelagic fish held in Las Palmas de Gran Canaria 24-28 january 1994. :307-315. Abstract
1993
Chavez, EA, Gorduno M, Arreguin-Sanchez F.  1993.  Trophic dynamic structure of Celestun Lagoon, southern Gulf of Mexico. Trophic models of aquatic ecosystems. ICLARM Conference Proceedings 26, 390 p.. :186-192. Abstract
Vega-Cendejas, ME, Arreguin-Sanchez F, Hernandez M.  1993.  Trophic fluxes on the Campeche Bank, Mexico. :206-213. Abstract