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2012
Varkey, D, Ainsworth CH, Pitcher TJ.  2012.  Modelling Reef Fish Population Responses to Fisheries Restrictions in Marine Protected Areas in the Coral Triangle. Journal of Marine Biology. 2012
2010
Pitcher, TJ, Ainsworth CH.  2010.  Resilience to change in two coastal communities: Using the maximum dexterity fleet. Marine Policy. 34:810–814.
2008
Ainsworth, CH, Pitcher TJ, Heymans JJ, Vasconcellos M.  2008.  Reconstructing historical marine ecosystems using food web models: Northern British Columbia from Pre-European contact to present. Ecological Modelling. 216:354-368.
Ainsworth, CH, Varkey DA, Pitcher TJ.  2008.  Ecosystem simulations supporting ecosystem-based fisheries management in the Coral Triangle, Indonesia. Ecological Modelling. 214:361-374.
Ainsworth, CH, Varkey DA, Pitcher TJ.  2008.  Ecosystem simulation models of Raja Ampat, Indonesia, in support of ecosystem based fisheries management. Fisheries Centre Research Reports. 16:3.
2007
Ainsworth, CH, Varkey D, Pitcher TJ.  2007.  Ecosystem simulation models for the Bird’s Head Seascape, Papua, fitted to field data. Ecological and economic analyses of marine ecosystems in the Bird’s Head Seascape, Paupa, Indonesia: I. :1–174.
2006
Ainsworth, CH, Pitcher TJ.  2006.  Modifying Kempton's species diversity index for use with ecosystem simulation models. Ecological Indicators. 6:623-630.
2005
Ainsworth, CH, Pitcher TJ.  2005.  Evaluating marine ecosystem restoration goals for Northern British Columbia. Fisheries Assessment and Management in Data-Limited Situations.. :419–438.
Pitcher, TJ, Ainsworth CH, Buchary EA, Cheung W, Forrest R, Haggan N, Lozano H, Morato T, Morissette L.  2005.  Strategic management of marine ecosystems using whole-ecosystem simulation modelling: The ‘back to the future’policy approach. Strategic management of marine ecosystems. :199–258.