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2000
Sandberg, J, Elmgren R, Wulff F.  2000.  Carbon flows in Baltic Sea food webs -- a re-evaluation using a mass balance approach. Journal of Marine Systems. 25:249-260. Abstract
2002
Kitchell, JF, Essington TE, Boggs CH, Schindler DE, Walters CJ.  2002.  The role of sharks and longline fisheries in a pelagic ecosystem of the Central Pacific. Ecosystems. 5:202-216. Abstract
Cox, SP, Essington TE, Kitchell JF, Martell SJD, Walters CJ, Boggs C, Kaplan I.  2002.  Reconstructing ecosystem dynamics in the central Pacific Ocean, 1952-1998. II. A preliminary assessment of the trophic impacts of fishing and effects on tuna dynamics. Canadian Journal of Fisheries and Aquatic Sciences. 59:1736-1747. Abstract
2003
Krebs, CJ, Danell K, Angerbjorn A, Agrell J, Berteaux D, Brathen KA, Danell O, Erlinge S, Fedorov V, Fredga K et al..  2003.  Terrestrial trophic dynamics in the Canadian Arctic. Canadian Journal of Zoology-Revue Canadienne De Zoologie. 81:827-843. Abstract
Rybarczyk, H, Elkaim B, Ochs L, Loquet N.  2003.  Analysis of the trophic network of a macrotidal ecosystem: the Bay of Somme (Eastern Channel). Estuarine Coastal and Shelf Science. 58:405-421. Abstract
Harvey, CJ, Cox SP, Essington TE, Hansson S, Kitchell JF.  2003.  An ecosystem model of food web and fisheries interactions in the Baltic Sea. ICES Journal of Marine Science. 60:939-950. Abstract
Watters, GM, Olson RJ, Francis RC, Fiedler PC, Polovina JJ, Reilly SB, Aydin KY, Boggs CH, Essington TE, Walters CJ et al..  2003.  Physical forcing and the dynamics of the pelagic ecosystem in the eastern tropical Pacific: simulations with ENSO-scale and global-warming climate drivers. Canadian Journal of Fisheries and Aquatic Sciences. 60:1161-1175. Abstract
2006
Fayram, AH, Hansen MJ, Ehlinger TJ.  2006.  Characterizing changes in maturity of lakes resulting from supplementation of walleye populations. Ecological Modelling. 197:103-115. Abstract
Araujo, JN, Mackinson S, Stanford RJ, Sims DW, Southward AJ, Hawkins SJ, Ellis JR, Hart PJB.  2006.  Modelling food web interactions, variation in plankton production, and fisheries in the western English Channel ecosystem. Marine Ecology-Progress Series. 309:175-187.
2007
Österblom, H, Hansson S, Larsson U, Hjerne O, Wulff F, Elmgren R, Folke C.  2007.  Human-induced trophic cascades and ecological regime shifts in the Baltic Sea. Ecosystems. 10:877-889.
2008
Tam, J, Taylor MH, Blaskovic V, Espinoza P, Ballón M, Díaz E, Wosnitza-Mendo C, Argüelles J, Purca S, Ayón P et al..  2008.  Trophic modeling of the Northern Humboldt Current Ecosystem, Part I: Comparing trophic linkages under La Niña and El Niño conditions. Progress In Oceanography. 79(2-4):352-365. Abstract
Taylor, MH, Tam J, Blaskovic V, Espinoza P, Ballón M, Wosnitza-Mendo C, Argüelles J, Díaz E, Purca S, Ochoa N et al..  2008.  Trophic modeling of the Northern Humboldt Current Ecosystem, Part II: Elucidating ecosystem dynamics from 1995 to 2004 with a focus on the impact of ENSO. Progress In Oceanography. 79(2-4):366-378. Abstract
2010
Lauria, V, Pinnegar J, Mackinson S, Votier S, Edwards M, Attrill M, Brown A, Campbell MS.  2010.  Effects of fishing and climate on apex main predators: Ecopath with Ecosim modelling the Celtic Sea ecosystem. Proceedings from the 2010 AGU Ocean Sciences Meeting.
2011
Espinosa-Romero, MJ, Gregr EJ, Walters C, Christensen V, Chan K.  2011.  Representing mediating effects and species reintroductions in Ecopath with Ecosim. Ecological Modelling.
2012
Ruzicka, JJ, Brodeur RD, Emmett RL, Steele JH, Zamon JE, Morgan CA, Thomas AC, Wainwright TW.  2012.  Interannual variability in the Northern California Current food web structure: Changes in energy flow pathways and the role of forage fish, euphausiids, and jellyfish. Progress in Oceanography.
Colléter, M, Gascuel D, Ecoutin JM, Tito de Morais L.  2012.  Modelling trophic flows in ecosystems to assess the efficiency of marine protected area (MPA), a case study on the coast of Sénégal. Ecological Modelling. 232:1-13.
Espinoza-Tenorio, A, Wolff M, Taylor MH, Espejel I.  2012.  What model suits ecosystem-based fisheries management? A plea for a structured modeling process Reviews in Fish Biology and Fisheries. :1-14.